‘Premier Russet’ has a late vine maturity and ‘Rio Grande Russet’ has a medium late maturity. 0–6.5) than ‘Premier Russet’ (6.0–7.5). For the progeny, mean trait values displayed a wide range of phenotypic variation (Additional file 4: Table S3), with a high correlation between years (> 0.70, P < 0.001) and across environments (> 0.55, P < 0.001). The broad-sense heritability for both years at each location was statistically significant, with H 2 estimates ranging from 0.83 to 0.93 (Table 2). These results were consistent for all vine maturity traits. When mean values for maturity were mapped to the linkage maps, a significant association was detected on chromosome 5 (Fig. 2, Additional file 6: Figure S2). This association was consistent between years and environments. Logarithm of the odds (LOD) scores ranged from of 21.2 and 34.1, well above the permutation thresholds. Collectively, they explained between 38 and 54% of the trait variance (Table 3). The peak of the LOD profile was consistently detected at 15.0 cM (Table 3, Fig. 2). The best simple model for maturity was a double-simplex configuration (AAAB ? AAAB) on homologous chromosomes H2 and H8 of Rio Grande russet (RGR) and Premier Russet (PR), respectively (Additional file 6: Figure S2). This model implies a QTL with allele effects from both parents, and with the B allele associated with earlier maturity (P < 0.001). Thus, progeny with two copies of the B allele (AABB) had on average earlier maturity (3.1–4.0) than progeny with a single copy (AAAB, 4.5–6.2) or lacking the B allele (AAAA, 6.4–7.5).
LOD rating shipping out-of QTLs to own characteristics at maturity locus area to the chromosome 5. For every committee about profile is short for an alternative feature. LOD threshold 95% believe menstruation was placed in Table step 3. California, citric acid 2010; EB, very early blight; FBE, bud-avoid fry color Idaho; GH, growth practice; GLU, glucose; M95, vine maturity from the 95DAP; M120, vine readiness from the 120DAP; TSHA, tuber shape; VW, Verticillium wilt; ID, Idaho; NC, New york; DAP, months once planting; numbers 10 and you can eleven in the attribute labels indicate decades 2010 and you will 2011, respectively
The brand new SNP nearest towards QTL to have readiness that had a good double-simplex setting are solcap_snp_c2_11605, located at 9.step 1 cM. Regression of your own maturity mean beliefs to the genotype for the SNP explained ranging from 38 and fifty% of one’s phenotypic difference. The brand new top of your own LOD contour (15 cM) is arranged contained in this a space ranging from indicators one spanned 8 in order to 10 cM, towards solcap_snp_c2_11605 situated on one to side of the gap. This particular area slots the latest Solanum tuberosum bicycling DOF basis gene step 1 (StCDF1, PGSC0003DMG400018408), which was reported to be a major regulator from potato plant maturity . Graphical signal of your own hereditary and you will actual (Mb) distance from homologous chromosomes H2 and you may H8 exhibited the brand new expected curve contour and you will match well with chromosome framework proving a leading training of concordance involving the hereditary status (cM) and you may real place (Mb) (A lot more file eight: Contour S3).
Multiple qualities co-localize https://datingranking.net/escort-directory/colorado-springs/ during the maturity locus area for the chromosome 5
Seven qualities also citric acidic (CANC10), development behavior (GHID, GHNC), bud-avoid fry colour (FBEID), early blight get (EBID11), tuber glucose (GLUID11), tuber profile (TSHAID), and you can Verticillium wilt rating (VWID11) co-localized with vine readiness attributes (MAT95ID, MAT95NC, MAT120ID, MAT120NC) on the chromosome 5 (Table step 3, Fig. 2). An informed genetic design for everyone traits, except GLUID11 and FBEID was a double-simplex affect H2 and you can H8 into the SNP, solcap_snp_c2_11605, which have it setting (Dining table step 3). If the residuals in the regression of the many half dozen traits on the vine maturity had been analyzed, no tall aftereffect of a beneficial QTL was located having EBID11, TSHAID, and you can GHNC. For progress habit (GHID) and you can VWID11, a significant QTL was observed as long as corrected having readiness at the 95DAP but wasn’t extreme within 120DAP. Analysis of sugar concentrations (GLUID11) exhibited an effective LOD out-of step three.9 on 21 cM, which have a great QTL effect on H2 and you will H5. After adjusting having maturity, a peak in the LOD contour having GLUID11 was noticed only below the 95% permutation tolerance.